| Graduate Programs |
| Graduate School of Humanities |
- Graduate Program in Christian Thought
- Graduate Program in Religious Thought
- Graduate Program in Anthropology
- Graduate Program in Educational Facilitation
- Graduate Program in Linguistic Science
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| Graduate School of International Area Studies |
- Graduate Program in International Area Studies
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| Graduate School of Social Sciences |
- Graduate Program in Economics
- Graduate Program in Management
- Graduate Program in Policy Studies
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| Graduate School of Law |
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| Graduate School of Sciences and Engineering |
- Graduate Program of Systems and Mathematical Sciences
*Graduate Program of Systems and Mathematical Sciences (Master's Course) will stop recruiting students from April 2023.
- Graduate Program of Software Engineering
- Graduate Program of Mechatronics
- Graduate Program of Data Science
*Graduate Program of Data Science (Master's Course) will be established in April 2023.
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| Nanzan School of Law |
- Graduate Program in Legal Practice
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| Undergraduate Programs |
| Faculty of Humanities |
- Department of Christian Studies
- Department of Anthropology and Philosophy
- Department of Psychology and Human Relations
- Department of Japanese Studies
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| Faculty of Foreign Studies |
- Department of British and American Studies
- Department of Spanish and Latin American Studies
- Department of French Studies
- Department of German Studies
- Department of Asian Studies
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| Faculty of Economics |
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| Faculty of Business Administration |
- Department of Business Administration
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| Faculty of Law |
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| Faculty of Policy Studies |
- Department of Policy Studies
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| Faculty of Science and Technology |
- Department of Software Engineering
- Department of Data Science
- Department of Electronics and Communication Technology
- Department of Mechanical Engineering and System Control
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| Faculty of Global Liberal Studies |
- Department of Global Liberal Studies
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| Foreign Language Education Center |
| Center for Teacher Education |
| Physical Education Center |
| Center for International Affairs |
- Center for Japanese Studies
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| Center for Information and Communication Technology |
- Center for Audio-Visual Education
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| Health Center |
| Nanzan Extension College |
| Institutes |
- Anthropological Institute
- Nanzan Institute for Religion and Culture
- Institute for Social Ethics
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| Area Studies Centers |
- Center for American Studies
- Center for Latin American Studies
- Center for European Studies
- Center for Asia-Pacific Studies
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| Research Centers |
- Center for the Study of Human Relations
- Center for Linguistics
- Center for Management Studies
- Center for Science and Engineering
- Center for Legal Practice-Education and Research
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| Nanzan University Museum of Anthropology |
| University Library |
| Christian Center |
| University Compliance Office |
| Institutional Research Promotion Office |
